Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs4618993 chr1:102913344 T/C 9.34E-7 182 13.03 16.17 2.7 KM Plot
ESCA rs475587 chr15:65613559 C/T 7.07E-5 183 12.9 16.53 4.08 KM Plot
ESCA rs4895684 chr6:146114023 A/C 2.64E-5 184 9.77 13.5 13.57 KM Plot
ESCA rs5025937 chr21:45584404 T/C 1.52E-6 178 3.73 14.32 13.4 KM Plot
ESCA rs527483 chr15:65615327 C/T 7.07E-5 183 12.9 16.53 4.08 KM Plot
ESCA rs55724479 chr8:41377471 T/A 1.2E-7 182 12.97 20 2.7 KM Plot
ESCA rs55831441 chr9:90919805 T/C 6.08E-5 181 13.37 13.1 3.93 KM Plot
ESCA rs55848151 chr1:3698637 G/A 1.75E-12 183 13.03 16.4 2.27 KM Plot
ESCA rs55855112 chr8:8591880 AG/A 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs55867547 chr8:8591807 T/TGTA 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs55874147 chr8:8591954 T/C 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs55889147 chr8:120867693 G/A 4.88E-7 181 13 18.6 3.73 KM Plot
ESCA rs55902521 chr9:90919594 C/T 5.56E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs56067092 chr9:90919490 T/C 5.56E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs56152067 chr8:8592992 G/A 3.88E-5 184 13.37 13.67 4.97 KM Plot